PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009121858.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family SRS
Protein Properties Length: 361aa    MW: 37864.6 Da    PI: 8.2218
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009121858.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702206.85.8e-641613143154
          DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaesk 97 
                     sgta+CqdCGnqakk+C+++RCRtCCksrgfdC+thvkstWv+aa+rrerq + +a++s+ +++ +   s+++++        +s+t++s ++++
  XP_009121858.1 161 SGTATCQDCGNQAKKECKQRRCRTCCKSRGFDCSTHVKSTWVSAARRRERQVMPTASTSSGTKKPRIVGSQQQQQA-------TSHTSTS-NTPP 247
                     7899**********************************************99998887666555433333333222.......2222222.2233 PP

          DUF702  98 keletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                     ++++tss          +P +v+++avf+cvrv++v+dg++e+aYq++v+igGhvfkG+LydqGle 
  XP_009121858.1 248 QSFDTSSsrqdggpreaWPGQVRAAAVFKCVRVTAVEDGDDEYAYQAVVKIGGHVFKGFLYDQGLEP 314
                     33333333334444445***********************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051422.1E-57163313IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016232.1E-26165207IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016241.9E-30264312IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0048364Biological Processroot development
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MTTSSRATED LSLGFNAGPS VVHGGLASTS AAAGVPSWPL GSSLRYGLPS SPAAAEMGMV  60
GLRDVYLVAP AYHHQNAGVV SGSDQINSNA ALGVGMIPLL TAAPPHQQNV EDTDINFLGD  120
SRRWQNNNNS HNQTQYLHFK SAHQTAVASS SNNSGSGSAA SGTATCQDCG NQAKKECKQR  180
RCRTCCKSRG FDCSTHVKST WVSAARRRER QVMPTASTSS GTKKPRIVGS QQQQQATSHT  240
STSNTPPQSF DTSSSRQDGG PREAWPGQVR AAAVFKCVRV TAVEDGDDEY AYQAVVKIGG  300
HVFKGFLYDQ GLEPKEGFPN MSDLHLGGGA DNNNGVSVAS QPNLDPPPNL YGGGGSGGFY  360
G
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009121858.10.0PREDICTED: protein LATERAL ROOT PRIMORDIUM 1
SwissprotQ94CK91e-154LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBLM4CXF10.0M4CXF1_BRARP; Uncharacterized protein
STRINGBra008898.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58832646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.41e-178Lateral root primordium (LRP) protein-related